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In this research, the hereditary diversity of five communities of Cicer graecum, an endangered endemic types from northern Peloponnisos, Greece and a wild relative of the cultivated Cicer arietinum, had been investigated using inter-simple sequence repeats (ISSRs) and amplified fragment length polymorphism (AFLP) markers in order to determine amounts and structure of genetic variability. Nei's gene diversity by ISSR and AFLP markers suggested method to high genetic variety in the populace l