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Advanced Backcross (A populations have been widely used to identify and utilize beneficial alleles in various crops such as rice, tomato, wheat and barley. For the development of an AB population, a controlled crossing scheme is used and this controlled crossing along with the selection (both natural and artificial) of agronomically-adapted alleles during the development of AB population may lead to unbalanced allele frequencies in the population. However, it is commonly believed that interval mapping mapping of traits in experimenta