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The E3 ubiquitin ligases participate in the degradation of plant proteins and play a regulatory role in stress response. However, the role of tomato E3 ubiquitin ligase genes in plant response to heavy metal stress remains elusive. Here, we identified 17 tomato E3 ubiquitin ligase genes using blast analysis of highly expressed E3 ubiquitin ligase genes of Arabidopsis thaliana. Through organ expression analysis, three E3 ubiquitin ligase genes with higher expression levels in roots were further screened out, and they were named Sl1, SlRHE