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In addition, we used RT-PCR to verify differential alternative splicing events in cyclin T1 (CCNT1) as a case study. RESULTS We identified 427 prospect genes with differentially expressed AS exons in contaminated T-cells, including 20 genes linked to mobile surface, 35 to kinases, and 121 to immune-related genes. In addition, protein-protein conversation analysis identified six essential subnetworks pertaining to the viral life cycle, including Transcriptional regulation by TP53, Class I MHC mediated antigen, G2/M transition, and late perio