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Correct imputation of BovineHD BeadChip markers is possible in Nellore cattle using the brand new bovine reference genome installation ARS-UCD1.2. The utilization of large guide and target panels gets better the accuracy of the imputed genotypes and provides genotypes for more markers segregating at low-frequency for downstream genomic analyses. The model-based imputation high quality score from Minimac3 (Rsq) can be used to detect poorly imputed alternatives but its dependability is dependent u